I wish to use the devtools
package. I\'ve run the following commands:
> install.packages(\"devtools\", dependencies = TRUE)
....
> library
CentOS 7:
I tried solutions in this post
sudo yum -y install libcurl libcurl-devel
sudo yum -y install openssl-devel
but wasn't enough.
Checking R error in Console gave me the anwser. In my case it was lacking libxml-2.0 below (and Console printed an explanation with package name to different Linux versions and other possible R configs)
sudo yum -y install libxml2-devel
As per damienfrancois's suggestion, I installed libcurl4-gnutls-dev and the problem was solved.
EDIT (@dardisco)
In your shell:
apt-get -y build-dep libcurl4-gnutls-dev
apt-get -y install libcurl4-gnutls-dev
None of the above answers worked for me on Ubuntu 18.04.3 LTS using R version 3.6.1
My guess is this might have something to do with Anaconda3
...
What worked for me is:
conda install -c r r-devtools
Then in R
install.packages("rlang")
install.packages("devtools")
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS
Matrix products: default
BLAS/LAPACK: /home/tsundoku/anaconda3/lib/R/lib/libRblas.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.1 tools_3.6.1 tcltk_3.6.1
I'm on windows and had the same issue.
I used the below code :
install.packages("devtools", type = "win.binary")
Then library(devtools) worked for me.
I found solution by seeing errors by R-Studio when I tried to install devtools package...Basically Error is because of dependence libraries not installed in linux Look at ANTICONF ERROR Below
Installing package into ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependencies ‘curl’, ‘gh’, ‘openssl’, ‘xml2’, ‘usethis’, ‘covr’, ‘httr’, ‘roxygen2’, ‘rversions’
trying URL 'https://cloud.r-project.org/src/contrib/curl_4.3.tar.gz'
Content type 'application/x-gzip' length 673779 bytes (657 KB)
==================================================
downloaded 657 KB
trying URL 'https://cloud.r-project.org/src/contrib/gh_1.1.0.tar.gz'
Content type 'application/x-gzip' length 29043 bytes (28 KB)
==================================================
downloaded 28 KB
trying URL 'https://cloud.r-project.org/src/contrib/openssl_1.4.2.tar.gz'
Content type 'application/x-gzip' length 1204168 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
trying URL 'https://cloud.r-project.org/src/contrib/xml2_1.3.2.tar.gz'
Content type 'application/x-gzip' length 271876 bytes (265 KB)
==================================================
downloaded 265 KB
trying URL 'https://cloud.r-project.org/src/contrib/usethis_1.6.1.tar.gz'
Content type 'application/x-gzip' length 255052 bytes (249 KB)
==================================================
downloaded 249 KB
trying URL 'https://cloud.r-project.org/src/contrib/covr_3.5.0.tar.gz'
Content type 'application/x-gzip' length 146148 bytes (142 KB)
==================================================
downloaded 142 KB
trying URL 'https://cloud.r-project.org/src/contrib/httr_1.4.2.tar.gz'
Content type 'application/x-gzip' length 159950 bytes (156 KB)
==================================================
downloaded 156 KB
trying URL 'https://cloud.r-project.org/src/contrib/roxygen2_7.1.1.tar.gz'
Content type 'application/x-gzip' length 254118 bytes (248 KB)
==================================================
downloaded 248 KB
trying URL 'https://cloud.r-project.org/src/contrib/rversions_2.0.2.tar.gz'
Content type 'application/x-gzip' length 41558 bytes (40 KB)
==================================================
downloaded 40 KB
trying URL 'https://cloud.r-project.org/src/contrib/devtools_2.3.1.tar.gz'
Content type 'application/x-gzip' length 373604 bytes (364 KB)
==================================================
downloaded 364 KB
* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked
** using staged installation
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lcurl
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
deb: **libcurl4-openssl-dev** (Debian, Ubuntu, etc)
* rpm: libcurl-devel (Fedora, CentOS, RHEL)
* csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/curl’
Warning in install.packages :
installation of package ‘curl’ had non-zero exit status
* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked
** using staged installation
Using PKG_CFLAGS=
--------------------------- [ANTICONF] --------------------------------
Configuration failed because openssl was not found. Try installing:
deb: **libssl-dev** (Debian, Ubuntu, etc)
* rpm: openssl-devel (Fedora, CentOS, RHEL)
* csw: libssl_dev (Solaris)
* brew: openssl@1.1 (Mac OSX)
If openssl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
-------------------------- [ERROR MESSAGE] ---------------------------
tools/version.c:1:10: fatal error: openssl/opensslv.h: No such file or directory
1 | #include <openssl/opensslv.h>
| ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
--------------------------------------------------------------------
ERROR: configuration failed for package ‘openssl’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/openssl’
Warning in install.packages :
installation of package ‘openssl’ had non-zero exit status
* installing *source* package ‘xml2’ ...
** package ‘xml2’ successfully unpacked and MD5 sums checked
** using staged installation
Package libxml-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libxml-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libxml-2.0' found
Package libxml-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libxml-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libxml-2.0' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lxml2
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libxml-2.0 was not found. Try installing:
deb: **libxml2-dev** (Debian, Ubuntu, etc)
* rpm: libxml2-devel (Fedora, CentOS, RHEL)
* csw: libxml2_dev (Solaris)
If libxml-2.0 is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘xml2’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/xml2’
Warning in install.packages :
installation of package ‘xml2’ had non-zero exit status
ERROR: dependencies ‘curl’, ‘openssl’ are not available for package ‘httr’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/httr’
Warning in install.packages :
installation of package ‘httr’ had non-zero exit status
ERROR: dependency ‘xml2’ is not available for package ‘roxygen2’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/roxygen2’
Warning in install.packages :
installation of package ‘roxygen2’ had non-zero exit status
ERROR: dependencies ‘curl’, ‘xml2’ are not available for package ‘rversions’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/rversions’
Warning in install.packages :
installation of package ‘rversions’ had non-zero exit status
ERROR: dependency ‘httr’ is not available for package ‘gh’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/gh’
Warning in install.packages :
installation of package ‘gh’ had non-zero exit status
ERROR: dependency ‘httr’ is not available for package ‘covr’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/covr’
Warning in install.packages :
installation of package ‘covr’ had non-zero exit status
ERROR: dependencies ‘curl’, ‘gh’ are not available for package ‘usethis’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/usethis’
Warning in install.packages :
installation of package ‘usethis’ had non-zero exit status
ERROR: dependencies ‘usethis’, ‘covr’, ‘httr’, ‘roxygen2’, ‘rversions’ are not available for package ‘devtools’
* removing ‘/home/hafiz/R/x86_64-pc-linux-gnu-library/3.6/devtools’
Warning in install.packages :
installation of package ‘devtools’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpexapon/downloaded_packages’
look at bold libraries which are missing libssl-dev libxml2-dev
just you need to install these libraries in ubuntu terminal or
whatever operating system you are using you will find relative errors w r t operating system see errors in details.. R-studio mentioned relative library package name against operating system
for ubuntu i did this
sudo apt-get install libssl-dev
**sudo apt-get install libxml2-dev **
sudo apt-get install libcurl4-openssl-dev
Centos 6.8
this work like charm for me
$yum -y install libcurl libcurl-devel
$rstudio-server verify-installation