I am using QueryPerformanceCounter to time some code. I was shocked when the code starting reporting times that were clearly wrong. To convert the results of QPC into \"real\"
Just a shot in the dark.
On my home PC I used to have "AI NOS" or something like that enabled in the BIOS. I suspect this screwed up the QueryPerformanceCounter/QueryPerformanceFrequency APIs because although the system clock ran at the normal rate, and normal apps ran perfectly, all full screen 3D games ran about 10-15% too fast, causing, for example, adjacent lines of dialog in a game to trip on each other.
You can try to use the Stopwatch class from .NET, it could help with your problem since it abstracts from all this low-lever stuff.
Use the IsHighResolution property to see whether the timer is based on a high-resolution performance counter.
Note: On a multiprocessor computer, it does not matter which processor the thread runs on. However, because of bugs in the BIOS or the Hardware Abstraction Layer (HAL), you can get different timing results on different processors. To specify processor affinity for a thread, use the ProcessThread..::.ProcessorAffinity method.
I'm afraid you can't say "I shouldn't have this problem" when you're using QueryPerformance* - while the documentation states that the value returned by QueryPerformanceFrequency is constant, practical experimentation shows that it really isn't.
However you also don't want to be calling QPF every time you call QPC either. In practice we found that periodically (in our case once a second) calling QPF to get a fresh value kept the timers synchronised well enough for reliable profiling.
As has been pointed out as well, you need to keep all of your QPC calls on a single processor for consistent results. While this might not matter for profiling purposes (because you can just use ProcessorAffinity to lock the thread onto a single CPU), you don't want to do this for timing which is running as part of a proper multi-threaded application (because then you run the risk of locking a hard working thread to a CPU which is busy).
Especially don't arbitrarily lock to CPU 0, because you can guarantee that some other badly coded application has done that too, and then both applications will fight over CPU time on CPU 0 while CPU 1 (or 2 or 3) sit idle. Randomly choose from the set of available CPUs and you have at least a fighting chance that you're not locked to an overloaded CPU.
You should always expect the core frequency to change on any CPU that supports technology such as SpeedStep or Cool'n'Quiet. Wall time is not affected, it uses a RTC. You should probably stop using the performance counters, unless you can tolerate a few (5-50) millisecond's worth of occasional phase adjustments, and are willing to perform some math in order to perform the said phase adjustment by continuously or periodically re-normalizing your performance counter values based on the reported performance counter frequency and on RTC low-resolution time (you can do this on-demand, or asynchronously from a high-resolution timer, depending on your application's ultimate needs.)
Apparently there is a known issue with QPC on some chipsets, so you may want to make sure you do not have those chipset. Additionally some dual core AMDs may also cause a problem. See the second post by sebbbi, where he states:
QueryPerformanceCounter() and QueryPerformanceFrequency() offer a bit better resolution, but have different issues. For example in Windows XP, all AMD Athlon X2 dual core CPUs return the PC of either of the cores "randomly" (the PC sometimes jumps a bit backwards), unless you specially install AMD dual core driver package to fix the issue. We haven't noticed any other dual+ core CPUs having similar issues (p4 dual, p4 ht, core2 dual, core2 quad, phenom quad).
From this answer.