One other possibility that came to my mind is to use a serverside script to manipulate the source of the module when you are requesting it.
For example when you have to pass an API-key into the module, you do the following:
Before you do your first define() call, put the following code:
require.config({
paths: {
api: 'https://api.example.com/api.amd.js?api_key=f615ac61&'
}
});
This enables you to simply require your API from anywhere like this:
require(['api'], function(api){
});
So the server recieves the request - maps it thorugh mod_rewrite to some script, takes the GET parameter and puts it on the correct place in the module sourcecode, then returns the custom source.
Thats the way I solved this by now and it works like a charm, without the need to change any behaviour of the developers and it makes use of functionality thats already built into requirejs.