The VB compiler hasn't been abandoned, it's just a lack of time that is preventing the required work to update to newer VB versions.
Currently vbnc has support for VB 8 (aka Visual Studio 2005), with a few minor features from newer VB versions.
The easiest and safest would be to precompile your site on Windows, in which case you won't have to deal with any potential compiler issues (and you can use the most recent Visual Studio version). If you take this route you shouldn't run into any bugs you wouldn't hit using C# [1]
[1]: You'd be referencing one assembly more: Microsoft.VisualBasic.dll, which could be a source of bugs - but if you adhere to what is considered good programming practice for VB (turn on Option Strict) the chances that you'll hit any significant new bugs is pretty low.