R 2.14 - detect packages without namespace

Question

According to the R News for v2.14:

All packages must have a namespace, and one is created on installation if not supplied in the sources. This me

Answer 1

Great thread. I was stuck on the same problem. To finish all that needs to be done you can:

remove.packages(names(pkgNS[!pkgNS]))
install.packages(names(pkgNS[!pkgNS]))

Answer 2

Just run :

update.packages(checkBuilt=TRUE)

Answer 3

The function packageHasNamespace holds the key. Use it together with installed.packages:

The following code loops through all of the library locations in .libPaths:

pkgNS <- NULL
for(i in seq_along(.libPaths())){
  libLoc <- .libPaths()[i]
  pkgs <- installed.packages(lib.loc=libLoc)[, 1]
  pkgNS <- c(pkgNS, 
      sapply(unname(pkgs), packageHasNamespace, package.lib=libLoc)
  )
}

The result of this code is a named logical vector pkgNS that is TRUE if the package has a namespace, FALSE if it doesn't.

To get only those packages that don't have a namespace, create a subset of pkgNS where pkgNS is FALSE:

pkgNS[!pkgNS]

      abind      bitops   CircStats    combinat     corpcor      deldir 
      FALSE       FALSE       FALSE       FALSE       FALSE       FALSE 
     Design         evd   financial         fpc      getopt      gsubfn 
      FALSE       FALSE       FALSE       FALSE       FALSE       FALSE 
       ineq       magic     mlbench    optparse     plotrix       ppcor 
      FALSE       FALSE       FALSE       FALSE       FALSE       FALSE