I want to test whether coefficients in one linear regression are different from each other or whether at least one of them is significantly different from one certain value, say
The car
package has a simple function to do that.
First, fit your model:
model <- lm(Sepal.Length ~ Sepal.Width + Petal.Length, data = iris)
Than you may test different linear hypothesis using the linearHypothesis
function, for instance:
library(car)
# tests if the coefficient of Sepal.Width = Petal.Length
linearHypothesis(model, "Sepal.Width = Petal.Length")
Linear hypothesis test
Hypothesis:
Sepal.Width - Petal.Length = 0
Model 1: restricted model
Model 2: Sepal.Length ~ Sepal.Width + Petal.Length
Res.Df RSS Df Sum of Sq F Pr(>F)
1 148 16.744
2 147 16.329 1 0.4157 3.7423 0.05497 .
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
# Other examples:
# tests if the coefficient of Sepal.Width = 0
linearHypothesis(model, "Sepal.Width = 0")
# tests if the coefficient of Sepal.Width = 0.5
linearHypothesis(model, "Sepal.Width = 0.5")
# tests if both are equal to zero
linearHypothesis(model, c("Sepal.Width = 0", "Petal.Length = 0"))
You can compare the coefficients list from each respective model (say mod1 and mod2), as in:
diff=merge(mod1$coefficients, mod2$coefficients, by=0, all=TRUE)
diff[is.na(diff)]=0
diff$error=abs(diff$x-diff$y)
diff[order(diff$error, decreasing=TRUE),]
This produces a data frame sorted by the absolute value of the difference in coefficients, i.e.:
Row.names x y error
1 (Intercept) -0.264189182 -0.060450853 2.037383e-01
6 id 0.003402056 0.000000000 3.402056e-03
3 b -0.001804978 -0.003357193 1.552215e-03
2 a -0.049900767 -0.049417150 4.836163e-04
4 c 0.013749907 0.013819799 6.989203e-05
5 d -0.004097366 -0.004110830 1.346320e-05
If the slopes are not what you are after, you can access the other coefficients using the coef() function:
coef(summary(model))
To get Pr(>|z|), for example, use:
coef(summary(model))[,"Pr(>|z|)"]