Cartesian Product using data.table package

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南旧
南旧 2021-02-05 09:51

Using the data.table package in R, I am trying to create a cartesian product of two data.tables using the merge method as one would do in base R.

In base the following w

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  • 2021-02-05 10:09

    merge.data.table(x, y) is a convenience function that wraps a call to x[y], so the merge needs to be based on columns that are in both data.tables. (That's what that error message is trying to tell you).

    One work-around is to add a dummy column to both data.tables, whose only purpose is to make the merge possible:

    ## Add a column "k", and append it to each data.table's vector of keyed columns.
    setkeyv(cust.dt[,k:=1], c(key(cust.dt), "k"))
    setkeyv(dates.dt[,k:=1], c(key(dates.dt), "k"))
    
    ## Merge and then remove the dummy column
    res <- merge(dates.dt, cust.dt, by="k")
    head(res[,k:=NULL])
    #          date first.name last.name
    # 1: 2012-08-28     George     Smith
    # 2: 2012-08-28      Henry     Smith
    # 3: 2012-08-28       John       Doe
    # 4: 2012-08-29     George     Smith
    # 5: 2012-08-29      Henry     Smith
    # 6: 2012-08-29       John       Doe
    
    ## Maybe also clean up cust.dt and dates.dt    
    # cust.dt[,k:=NULL]
    # dates.dt[,k=NULL]
    
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  • 2021-02-05 10:10

    The solution from @JoshO'Brien uses merge but below is a similar alternative that does not (AFAIK).

    If I understand the documentation in ?data.table::merge correctly, X[Y] should be slightly faster than data.table::merge(X,Y) (as of version 1.8.7). It refers to FAQ 2.12 to address this question, but the FAQ is a little confusing. First, the correct reference should be 1.12, not 2.12. And they don't indicate whether they are referring to the base version of merge or the data.table one, or both. So, this might just end up being a messier-looking solution that is equivalent, or it might be faster.

    [Edit from Matthew] Thanks : now improved in v1.8.7 (?merge.data.table, FAQ 1.12 and added new FAQ 2.24)

    DT_orders<-data.table(date=as.POSIXct(c('2012-08-28','2012-08-29','2012-08-29','2012-09-01')),
                          first.name=as.character(c('John','John','George','Henry')),
                          last.name=as.character(c('Doe','Doe','Smith','Smith')),
                          qty=c(10,2,50,6),
                          key="first.name,last.name")
    
    # Note that I added a second record to the orders table for John Doe, to make sure it could handle duplicate first/last name combinations.
    
    DT_dates<-data.table(date=seq(from=as.POSIXct('2012-08-28'),
                                  to=as.POSIXct('2012-09-07'),by='day'),
                         key="date")
    
    DT_custdates<-data.table(k=1,unique(DT_dates),key="k")[unique(DT_orders)[,list(k=1,first.name,last.name)]][,k:=NULL]
    
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  • 2021-02-05 10:16

    If you construct full names from the first and last in the dataframes, you can use CJ (cross-join). You cannot use all three vectors since there would be 99 items.

    > nrow(CJ(dates$date, cust$first.name, cust$last.name ) )
    [1] 99
    

    This returns a data.table object:

    > CJ(dates$date,paste(cust$first.name, cust$last.name) )
                V1           V2
     1: 2012-08-28 George Smith
     2: 2012-08-28  Henry Smith
     3: 2012-08-28     John Doe
     4: 2012-08-29 George Smith
     5: 2012-08-29  Henry Smith
     6: 2012-08-29     John Doe
     7: 2012-08-30 George Smith
     8: 2012-08-30  Henry Smith
     9: 2012-08-30     John Doe
    10: 2012-08-31     John Doe
    11: 2012-08-31 George Smith
    12: 2012-08-31  Henry Smith
    13: 2012-09-01     John Doe
    14: 2012-09-01 George Smith
    15: 2012-09-01  Henry Smith
    16: 2012-09-02 George Smith
    17: 2012-09-02  Henry Smith
    18: 2012-09-02     John Doe
    19: 2012-09-03  Henry Smith
    20: 2012-09-03     John Doe
    21: 2012-09-03 George Smith
    22: 2012-09-04  Henry Smith
    23: 2012-09-04     John Doe
    24: 2012-09-04 George Smith
    25: 2012-09-05 George Smith
    26: 2012-09-05  Henry Smith
    27: 2012-09-05     John Doe
    28: 2012-09-06 George Smith
    29: 2012-09-06  Henry Smith
    30: 2012-09-06     John Doe
    31: 2012-09-07 George Smith
    32: 2012-09-07  Henry Smith
    33: 2012-09-07     John Doe
                V1           V2
    
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