I\'m using Tomcat 7 on Eclipse Juno. I use workspace metadata as server location (Please see my tomcat configurations below).
I found an applicable solution but not a perfect one.
What I have done is;
1.Changed server.xml file in installation location (In my case C:\apache-tomcat-7.0.35\conf)
2.Remove tomcat server from eclipse server panel (please see the image below)
3.Create a new server in eclipse server panel.
4.Then Server project will be generated new server.xml with my customized changes.
5.The trick is, initially eclipse picks server.xml from installation location when create a new server in panel.
Thanks