If the problem is just with kapersky, then just have your program detect if it is running. If so, scale back your file creation / writes to whatever passes their detection. Make sure you have some little status message somewhere that tells the user why things are slow. Incidentally, virus writers already know this which is why those heuristics simply don't work.
After doing that, contact Kapersky and work with them directly to get this resolved.
This gets past your immediate issue and will give you and kapersky time to figure out a long term solution.
Alternatively, you could simply shut kapersky down.. Just make sure you grab all of their watch dogs in the process.. But that tends to be a little more combative.
