These days, I always default to using InnoDB, especially on the write-intensive tables you mention where MyISAM suffers from full table locking. Here's a to-the-point comparison.
Reasons to use MyISAM:
- Tables are really fast for select-heavy loads
- Table level locks limit their scalability for write intensive multi-user environments.
- Smallest disk space consumption
- Fulltext index
- Merged and compressed tables.
Reasons to use InnoDB:
- ACID transactions
- Row level locking
- Consistent reads – allows you to reach excellent read write concurrency.
- Primary key clustering – gives excellent performance in some cases.
- Foreign key support.
- Both index and data pages can be cached.
- Automatic crash recovery – in case MySQL shutdown was unclean InnoDB tables will still - recover to the consistent state- No check / repair like MyISAM may require.
- All updates have to pass through transactional engine in InnoDB, which often decreases - performance compared to non-transactional storage engines.
The above was taken from this site, which no longer seems to be working.