That depends on the implementation, if it will be distributed I would go with Java, seeing as you know that, because of its portability. If it is just for internal use, or will be used in semi-controlled environments, then go with whatever you are the most comfortable maintaining, and whichever has the best long-term outlook.
Now to just answer the question, I would go with Perl, but I'm a linux guy so I may be a bit biased in this.
