I have a large number of PDF files which have two slides to a page (for printing).
The format is A4 pages each with two slides setup like so:
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Try BRISS.
It lets you split each page into as many subpages as you want by defining regions with a GUI. It groups all similar pages into groups for you, so you can define regions for that group once.
It's cross-platform, free, and open-source.
(copy-pasted from https://superuser.com/a/235327/35237)