I am getting the following error when building in Xcode 10.0 with swift 4.2:
This works if you get the 'Build input file cannot be found error message' and also have files that are red in the inspector:
Open your project folder in Finder
Make a copy of the affected files onto your Desktop
Delete the affected files in Xcode and then close Xcode
Re-Open Xcode and drag your copied files into your Xcode project
This worked for me. Before I got the error message I was re-organising files in the file inspector which gave me that error message and made the files I was moving around turn red. Hope this helps !!