These are frameworks for different layers.
JSF is for the view (web) layer, it's a component oriented framework (every part of a page is a component, it has state) like Wicket or Tapestry, and unlike Action frameworks like Spring MVC, Struts or Stripes
Books: Core JavaServer Faces (3rd Edition)
Tutorials: CoreServlets.com
EJB 3.x is a container that's part of the JavaEE stack. It does things like dependency injection and bean lifecycle management. You usually need a full JavaEE application server for EJB3
Tutorials: JavaEE 6 Tutorial: EJB
Books: EJB 3 in Action
Spring is also a container, but Spring can run in any java code (a simple main class, an applet, a web app or a JavaEE enterprise app). Spring can do almost everything EJB can do and a lot more, but I'd say it's most famous for dependency injection and non-intrusive transaction management
Online Reference (excellent)
Books: I couldn't find a good english book on Spring 3.x, although several are in the making
Hibernate was the first big ORM (Object relational mapper) on the Java Platform, and as such has greatly inspired JPA (which is part of the EJB3 standard but can be used without an EJB container). I would suggest coding against JPA and only using hibernate as a provider, that way you can easily switch to EclipseLink etc.
Books: Pro JPA 2: Mastering the Java™ Persistence API (not hibernate-specific),
Java Persistence with Hibernate (getting a bit old)
