Say your .ssh directory contains 30 keys (15 private and 15 public).
.ssh
Where in Git can one check which one is used to connect to a given remote repository?>
This might be super edge, but after running ssh -vT git@github.com it showed me it was checking /root/.ssh for the keys, I was expecting it to check my home directory and then I realized I was logged in as root!
ssh -vT git@github.com
/root/.ssh