..$ rails s => Booting WEBrick => Rails 4.0.4 application starting in development on http://0.0.0.0:3000 => Run `rails server -h` for more startup options =>
Open the path/to/your/rails/project/tmp/pids/server.pid file.
path/to/your/rails/project/tmp/pids/server.pid
Copy the number you find therein.
Run kill -9 [PID]
kill -9 [PID]
Where [PID] is the number you copied from the server.pid file.
[PID]
server.pid
This will kill the running server process and you can start your server again without any trouble.