Personally I find that all the usual good practices from OO development apply in functional programming as well - just with a few minor tweaks to take account of the functional worldview. From a methodology perspective, you don't really need to do anything fundamentally different.
My experience comes from having moved from Java to Clojure in recent years.
Some examples:
Understand your business domain / data model - equally important whether you are going to design an object model or create a functional data structure with nested maps. In some ways, FP can be easier because it encourages you to think about data model separately from functions / processes but you still have to do both.
Service orientation in design - actually works very well from a FP perspective, since a typical service is really just a function with some side effects. I think that the "bottom up" view of software development sometimes espoused in the Lisp world is actually just good service-oriented API design principles in another guise.
Test Driven Development - works well in FP languages, in fact sometimes even better because pure functions lend themselves extremely well to writing clear, repeatable tests without any need for setting up a stateful environment. You might also want to build separate tests to check data integrity (e.g. does this map have all the keys in it that I expect, to balance the fact that in an OO language the class definition would enforce this for you at compile time).
Prototying / iteration - works just as well with FP. You might even be able to prototype live with users if you get very extremely good at building tools / DSL and using them at the REPL.
