I am trying to do quadrature decoding using atmel xmega avr microcontroller. Xmega has only 16-bit
counters. And in addition I hav
Just reading TCCO_CNT in multithreaded code is race condition if you do not handle it correctly. Check the section on reading 16bit registers in XMega manual. You should read lower byte first (this will be probably handled transparently by compiler for you). When lower byte is read, higher byte is (atomically) copied into the TEMP register. Then, reading high byte does read the TEMP register, not the counter. In this way atomic reading of 16bit value is ensured, but only if there is no access to TEMP register between low and high byte read.
Note that this TEMP register is shared between all counters, so context switch in right (wrong) moment will probably trash its content and therefore your high byte. You need to disable interrupts for this 16bit read. Because XMega will execute one instruction after the sei
with interrupts disabled, the best way is probably:
cli
ld [low_byte]
sei
ld [high byte]
It disables interrupts for four CPU cycles (if I counted it correctly).
An alternative would to save shared TEMP register(s) on each context switch. It is possible (not sure if likely) that your OS already does this, but be sure to check. Even so, you need to make sure colliding access does not occur from an ISR.
This precaution should be applied to any 16bit register read in your code. Either make sure TEMP register is correctly saved/restored (or not used by multiple threads at all) or disable interrupts when reading/writing 16bit value.