I was attempting to compare the results of this: (in ant)
I'm using javac compiler and I've found it produces different resulting binary .class files depending on the order of the source files passed as parameter. Between maven and ant I found differences. The order of the files were not the same.
Anyway, between the 2 compilations there were differences. I've disassembled the code and I found the javac (optimizer?) was removing the deprecated java jsr/ret assembly instructions from one of the compilations.
I don't know if this behaviour it's the result of "implicit" compilation: http://docs.oracle.com/javase/1.5.0/docs/tooldocs/solaris/javac.html#searching