Two matrices, A and B:
A = [1 2 3 9 7 5 4 9 4 1 4 7] B = [1 2 3 1 4 7]
All rows of matrix B are members of matrix A. I
Use ISMEMBER:
%# find rows in A that are also in B commonRows = ismember(A,B,'rows'); %# remove those rows A(commonRows,:) = [];