In the Google Docs it says
You can configure any manual or basic scaling module to accept requests from other modules in your app by restricting its h
I can confirm this is occurring, and I've reproduced the issue. The issue is being tracked over in the App Engine public issue tracker. Follow there for any updates.
For now, I think it's much better to be manually-inspecting the X-Appengine-Inbound-Appid
header, as this is managed by the infrastructure and can't be spoofed.
You could also implement OAuth, but that adds overhead you may not want or need on a small app.