In a .ear file, my EJBs are copied in several jar and war for some technical constraints. And only one of these jar contains the persistence.xml file where I have configured
As per the JPA spec, it should be possible for you to define a persistence unit at the EAR level that is visible to all the submodules that you define in the same .ear:
8.2.2 Persistence Unit Scope
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A persistence unit that is defined at the level of the EAR is generally visible to all components in the application. However, if a persistence unit of the same name is defined by an EJB-JAR, WAR, or application jar file within the EAR, the persistence unit of that name defined at EAR level will not be visible to the components defined by that EJB-JAR, WAR, or application jar file unless the persistence unit reference uses the persistence unit name # syntax to specify a path name to disambiguate the reference.
However, in section 8:
NOTE: Java Persistence 1.0 supported use of a jar file in the root of the EAR as the root of a persistence unit. This use is no longer supported. Portable applications should use the EAR library directory for this case instead. See [9].
So I would try to place the jar in the lib folder. If you need that module to be a EJB one, it must be in the root of the ear, so you can create a separate jar with the persistence.xml file.