I am making an app that scrolls information on the desktop. The window is transparent. I am starting out simple, trying to find the lowest CPU use for animating things and
If you are using the AllowsTransparency property you will have performance and compatibility problems.
The technical explanation is here:
http://blogs.msdn.com/dwayneneed/archive/2008/09/08/transparent-windows-in-wpf.aspx
from my personal (and painful) experience some display drivers will crush your program and others will make Windows work erratically when you have a WPF transparent window on screen for a long time, I recommend you try to re-write your GUI to not use transparency.