I am attempting to use an in-memory database to mock out a teradata database. I need to create a schema before the tables are built, however, it is giving me fits.
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If you run your script this way...
...then it is executed before Hibernate does its initialization stuff.
I have tested it again, especially for you. It is run before Hibernate creates the tables. See this log (running the script is in the first 3 lines, Hibernate in the last ones):
2011-11-01 19:10:08,380 [main] INFO org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseFactory - Creating embedded database 'dataSource'
2011-11-01 19:10:08,583 [main] INFO org.springframework.jdbc.datasource.init.ResourceDatabasePopulator - Executing SQL script from class path resource [my.sql]
2011-11-01 19:10:08,683 [main] INFO org.springframework.jdbc.datasource.init.ResourceDatabasePopulator - Done executing SQL script from class path resource [my.sql] in 100 ms.
2011-11-01 19:10:08,683 [main] INFO org.springframework.context.support.GenericApplicationContext - Bean 'dataSource' of type [class org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseFactoryBean] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2011-11-01 19:10:08,683 [main] INFO org.springframework.context.support.GenericApplicationContext - Bean 'dataSource' of type [class org.springframework.jdbc.datasource.SimpleDriverDataSource] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2011-11-01 19:10:08,700 [main] INFO org.springframework.context.support.GenericApplicationContext - Bean 'org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter#35712651' of type [class org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2011-11-01 19:10:08,717 [main] INFO org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean - Building JPA container EntityManagerFactory for persistence unit 'testH2DbPersistenceUnit'
2011-11-01 19:10:08,854 [main] INFO org.hibernate.annotations.common.Version - Hibernate Commons Annotations 3.2.0.Final
2011-11-01 19:10:08,859 [main] INFO org.hibernate.cfg.Environment - Hibernate 3.6.7.Final
2011-11-01 19:10:08,861 [main] INFO org.hibernate.cfg.Environment - hibernate.properties not found
...
2011-11-01 19:10:10,313 [main] INFO org.hibernate.tool.hbm2ddl.SchemaUpdate - Running hbm2ddl schema update
2011-11-01 19:10:10,313 [main] INFO org.hibernate.tool.hbm2ddl.SchemaUpdate - fetching database metadata
2011-11-01 19:10:10,315 [main] INFO org.hibernate.tool.hbm2ddl.SchemaUpdate - updating schema