In order to create my first, simple Kotlin project in Eclipse, I followed the steps in Getting Started with Eclipse Luna tutorial from Kotlin official website, i.e.:
For me it happened only once. I think this is some glitch from the Kotlin plugin, when you first create a Kotlin file and try run it.
Try "new Kotlin class" paste the same content and see if it works.
After that you should be able to run both files as it happened to me.