I see two issues with AngularJS application regarding search engines and SEO:
1) What happens with custom tags? Do search engines ignore the whole content within tho
The crawlers do not need a rich featured pretty styled gui, they only want to see the content, so you do not need to give them a snapshot of a page that has been built for humans.
My solution: to give the crawler what the crawler wants:
You must think of what do the crawler want, and give him only that.
TIP don't mess with the back. Just add a little server-sided frontview using the same API