Placing the SVG output directly inline with the page code I am able to simply modify fill colors with CSS like so:
po
A lot of IFs, but if your pre base64 encoded SVG starts:
then this encodes to:
PHN2ZyBmaWxsPSIjYmZhNzZl
Both encoded strings start the same:
PHN2ZyBmaWxsPSIj
The quirk of base64 encoding is every 3 input characters become 4 output characters. With the SVG starting like this then the 6-character hex fill color starts exactly on an encoding block 'boundary'. Therefore you can easily do a cross-browser JS replace:
output = input.replace(/MDAwMDAw/, "YmZhNzZl");
But tnt-rox answer above is the way to go moving forward.