If you are on a Linux/UNIX system then printing the ANSI escape sequence to clear the screen should do the job. You will also want to move cursor to the top of the screen. This will work on any terminal that supports ANSI.
import sys
sys.stderr.write("\x1b[2J\x1b[H")
This will not work on Windows unless ANSI support has been enabled. There may be an equivalent control sequence for Windows, but I do not know.
