Currently in d3 if you have a geoJSON object that you are going to draw you have to scale it and translate it in order to get it to the size that one wants and translate it
How I centered a Topojson, where I needed to pull out the feature:
var projection = d3.geo.albersUsa();
var path = d3.geo.path()
.projection(projection);
var tracts = topojson.feature(mapdata, mapdata.objects.tx_counties);
projection
.scale(1)
.translate([0, 0]);
var b = path.bounds(tracts),
s = .95 / Math.max((b[1][0] - b[0][0]) / width, (b[1][1] - b[0][1]) / height),
t = [(width - s * (b[1][0] + b[0][0])) / 2, (height - s * (b[1][1] + b[0][1])) / 2];
projection
.scale(s)
.translate(t);
svg.append("path")
.datum(topojson.feature(mapdata, mapdata.objects.tx_counties))
.attr("d", path)