I have a distributed application consisting of many components that communicate over TCP (for examle JMS) and HTTP. All components run on internal hardware, with internal IP add
I'd say it's reasonably safe, unless you think a ninja infiltrator is going to swap your server on you.
The 3rd party is there to make it harder to just 'up & generate' a new cert. Someone could re-create a self-signed cert on a new machine with the same details, it wouldn't be the same cert, you'd have to add an exception for it too, but your users probably wouldn't know the difference.