I\'d love to hear what advice the Clojure gurus here have about managing state in hierarchies. I find I\'m often using {:structures {:like {:this {:with {:many \'levels}}
Don't use nested atoms in a data structure if at all possible.
The main reason is that immutability is your friend. Clojure is a functional language that thrives on immutable data structures. Most libraries assume immutable data structures. Clojure's STM assumes immutable data structures to get the best possible concurrency. Immutability gives you the opportunity to take consistent snapshots of the entire state at any one instant. Pure functions that operate on immutable data are easy to develop and test.
If you put atoms inside your data structures then you lose all the advantages of immutability and risk making your code very complex - it's a lot harder to reason about a data structure if it contains a lot of mutable components.
Some suggested alternative approaches: