I messed up my configuration. I am running Ubuntu 14.04 and had some issues when I tried to move from a project to an other. I tried to uninstall and reinstall rbenv and then in
Find the bundle
executable (in a non project directory - default system ruby) and delete it:
which bundle
rm
Now go to your project directory, or switch to your ruby version and install bundler:
gem install bundler
Then execute rbenv rehash
and now try executing bundle install
and it should work. You will need to do this once for each ruby version installed.