\"First thing we do, let\'s kill all the lawyers.\" - William Shakespeare
Given the quote above, I would like to pull out \"k
I don't think theres any perfect answer to this question because there aren't any gold-set of input/output mappings which everybody will agree upon. You think the most important words for that sentence are ('kill', 'lawyers'), someone else might argue the correct answer should be ('first', 'kill', 'lawyers'). If you are able to very precisely and completely unambiguously describe exactly what you want your system to do, your problem will be more than half solved.
Until then, I can suggest some additional heuristics to help you get what you want.
Build an idf dictionary using your data, i.e. build a mapping from every word to a number that correlates with how rare that word is. Bonus points for doing it for larger n-grams as well.
By combining the idf values of each word in your input sentence along with their POS tags, you answer questions of the form 'What is the rarest verb in this sentence?', 'What is the rarest noun in this sentence', etc. In any reasonable corpus, 'kill' should be rarer than 'do', and 'lawyers' rarer than 'thing', so maybe trying to find the rarest noun and rarest verb in a sentence and returning just those two will do the trick for most of your intended use cases. If not, you can always make your algorithm a little more complicated and see if that seems to do the job better.
Ways to expand this include trying to identify larger phrases using n-gram idf's, building a full parse-tree of the sentence (using maybe the stanford parser) and identifying some pattern within these trees to help you figure out which parts of the tree do important things tend to be based, etc.