I\'ve had some trouble getting WiX projects to build on build servers. One of the pain points has been that my WiX projects are referencing libraries in c:\\program files
You can download just the WiX Binaries .zip from http://wixtoolset.org/releases/ then you can modify your wixproj file and update the element to point to your WixBinaries
The WiX documentation has an article that explains how: Integrating Wix Projects into your Daily Builds