I need to download and install about 50 CRLs once a week and install them on several Windows servers. Downloading is the easy part, is there a way I could script the CRL import
I don't know a way to do it via script. Can you write C code? If I understand what you want to do, you will use the CryptUiWizImport function, and the CRYPTUI_WIZ_IMPORT_SRC_INFO structure.
Here's a sample of code that installs a Cert; the corresponding CRL import is similar.
Addendum:
This post points out that Win32 APIs (such as CryptUiWizImport) are not directly accessible from PowerShell, and then describes a possible workaround: from within the PowerShell script, dynamically generate and compile C# code that does the P/Invoke stuff, and then run the resulting assembly. This would allow you to do the CryptUiWizImport strictly from a powershell script, although it would be a pretty exotic one.