Go to Windows services in the control panel and start the MySQL service. For me it worked. When I was doing a Java EE project I got this error" Communication link failure". I restarted my system and then it worked.
After that I again got the same error even after restarting my system. Then I tried to open the MySQL command line console and login with root, even then it gave me an error.
Finally when I started the MySQL service from Windows services, it worked.