These disappear if I do a page-up and page-down. Why does this happen and how do I rectify it?
http://i.stack.imgur.com/DnMYl.png
I recently fiddled around with
Hard to say without knowing what's in your vimrc, but you can confirm whether it's something in there by starting it up without running it and seeing if it still happens using the following...
vim -u NONE