MySQL Server version 5.1.41 with InnoDB plugin enabled. I have the following three tables for invoices: invoices, invoice_components and invoice_expenses. Table invoices has inv
You are using a transaction; autocommit does not disable transactions, it just makes them automatically commit at the end of the statements that do not have an explicit start transaction
on them.
What is happening is, some other thread is holding a record lock on some record (you're updating every record in the table!) for too long, and your thread is being timed out.
You can see more details of the event by issuing a "SHOW ENGINE INNODB STATUS" after the event. Ideally do this on a quiet test-machine.