I\'d just like to change this
cc211_AMBER_13062012i.II cc211_GROMOS_13062012i.II cc211_CHARM_13062012i.II cc211_OPLS_13062012i.II
to
How about this:
for i in *.II; do mv $i $(echo $i | sed 's/_13/_15/g'); done
This will replace _13 with _15 in all files with extension .II
_13
_15
.II
More information on sed here.